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Tag: genetics

The Narrative

Teasing out my cultural connections through genetics

Posted on 27 June 2022 by charlie

Special note: Talking about personal genetics is difficult: what you say not only reveals so much about you, but also your parents, your siblings, and your chil...

Links of note/Strategy

Repeated evolution in sticklebacks, and adjacent possibles

Posted on 23 April 2012 by charlie

“Researchers have documented repeated evolution in other organisms, but the sticklebacks are unique because the freshwater transition has occurred so many...

Links of note/Science/Strategy/The Narrative

The wacky world of horizontal gene transfer, genomic variants, and what we think are microbial species

Posted on 20 April 2012 by charlie

“The main difference from eukaryotes is that prokaryotic reproduction is independent of DNA acquisition and recombination. Instead, DNA is obtained from f...

Links of note/Science

The Impact of a Consortium of Fermented Milk Strains on the Gut Microbiome of Gnotobiotic Mice and Monozygotic Twins

Posted on 06 April 2012 by charlie

“The results also showed that (i) consumption of an FMP containing five bacterial strains was not associated with a statistically significant change in th...

Links of note/Science

A human gut microbial gene catalogue established by metagenomic sequencing : Nature

Posted on 22 March 2012 by charlie

“Beyond providing the global view of the human gut microbiome, the extensive gene catalogue we have established enables future studies of association of t...

Links of note/Science

Genome Sequence of E. coli O104:H4 Leads to Rapid Development of a Targeted Antimicrobial Agent against This Emerging Pathogen – PLoS ONE

Posted on 22 March 2012 by charlie

“A recent widespread outbreak of Escherichia coli O104:H4 in Germany demonstrates the dynamic nature of emerging and re-emerging food-borne pathogens, par...

Links of note/Science

Bacterial genomics: A new source of antimicrobial targets : Nature Reviews Microbiology

Posted on 21 March 2012 by charlie

“Bacterial clone-based genome sequencing frequently results in gaps, which harbour hypothetical genes of unknown function. Sorek and colleagues show that ...

Links of note/Science/The Narrative

Macro and Micro Diversity of Clostridium difficile Isolates from Diverse Sources and Geographical Locations – PLoS ONE

Posted on 19 March 2012 by charlie

“Clostridium difficile has emerged rapidly as the leading cause of antibiotic-associated diarrheal disease, with the temporal and geographical appearance ...

Links of note/Science/Strategy/The Narrative

Patterns of Gene Flow Define Species of Thermophilic Archaea: PLoS Biology

Posted on 12 March 2012 by charlie

“Patterns of homologous gene flow among genomes of 12 strains from a single hot spring in Kamchatka, Russia, demonstrate higher levels of gene flow within...

Links of note/Science/The Narrative

PLoS Biology: How Bacteria Turn Fiber into Food

Posted on 11 February 2012 by charlie

“Now, a new study by Eric Martens, David Bolam, and colleagues has looked into how a pair of the most common species of gut bacteria metabolize polysaccha...

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